The Maze Runner Blu-ray arrives in a two-disc combo pack, which includes two hours of bonus features. Created especially for this release by BOOM! Comics, fans can dive into the backstory world of the Gladers before Thomas' arrival, with the limited-edition, twenty-four page prequel comic book written by director Wes Ball and co-screenwriter T.S. Nowlin. Fans will also receive a limited time offer for the mobile game featuring a bonus runner "Newt," plus free in-game currency.

The full list of special features on The Maze Runner reads as follows with the cover art for the Blu-ray edition pictured beneath:

- 24-Page Prequel Comic Book
- Deleted Scenes with Commentary from Wes Ball
- Navigating The Maze: The Making of The Maze Runner (A Five Part Documentary that includes: The Maze is Born, Creating the World, Finding the Gang, The Movie Inside the Maze, and The Digital Details)
- The "Chuck Diaries"
- Gag Reel
- Visual Effects Reels
- Ruin Wes Ball Short Film in 2D and 3D with Commentary from Wes Ball
- Audio Commentary by Wes Ball and T.S. Nowlin
- Galleries
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